STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4105PFAM: major facilitator superfamily MFS_1; KEGG: azo:azo3975 putative AmpG protein. (547 aa)    
Predicted Functional Partners:
Lcho_4104
PFAM: peptidase M48 Ste24p; KEGG: mpt:Mpe_A0093 conserved hypothetical signal peptide protein.
       0.635
Lcho_4106
PFAM: flavin reductase domain protein FMN-binding; KEGG: mpt:Mpe_A3697 hypothetical protein.
     
 0.559
Lcho_2904
KEGG: har:HEAR3117 putative type 4 fimbrial biogenesis transmembrane protein.
  
     0.440
Lcho_1500
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
    0.423
Lcho_0369
KEGG: ajs:Ajs_3939 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C.
 
   
 0.410
Lcho_4107
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tbd:Tbd_2401 thioredoxin.
   
 
 0.401
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.