STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4119PFAM: Sel1 domain protein repeat-containing protein; KEGG: hip:CGSHiEE_05405 Sel1 domain protein repeat-containing protein. (175 aa)    
Predicted Functional Partners:
Lcho_0449
PFAM: Sel1 domain protein repeat-containing protein; KEGG: par:Psyc_0360 hypothetical protein.
 
    
0.893
Lcho_4118
Putative sensor with HAMP domain; PFAM: histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rfr:Rfer_0246 histidine kinase.
       0.552
Lcho_4117
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rfr:Rfer_0247 two component, sigma54 specific, transcriptional regulator, fis family.
       0.531
Lcho_2464
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: pna:Pnap_3140 AAA ATPase, central domain protein.
   
 0.475
Lcho_3054
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: mxa:MXAN_4510 ATPase, AAA family.
   
 0.475
Lcho_3267
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: mpt:Mpe_A0165 putative ATPase protein.
   
 0.475
Lcho_4113
KEGG: ava:Ava_1029 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
   
 
 0.443
Lcho_4115
PFAM: Two component regulator propeller; KEGG: mxa:MXAN_7206 sensor histidine kinase/response regulator.
       0.420
Lcho_4116
PFAM: cytochrome c class I; KEGG: syx:SynWH7803_0752 cytochrome c6.
       0.420
Lcho_0399
PFAM: Sel1 domain protein repeat-containing protein; KEGG: eba:ebA3865 hypothetical protein.
 
    
0.401
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.