STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4128PFAM: Tetratricopeptide TPR_4; KEGG: tcr:506401.190 hypothetical protein Pfam: Myosin_tail_1 FliD_C Nnf1 DUF593 PROSITE: GLU_RICH. (299 aa)    
Predicted Functional Partners:
Lcho_4126
KEGG: gur:Gura_2745 hypothetical protein.
       0.773
Lcho_4127
KEGG: gur:Gura_3254 hypothetical protein.
       0.773
Lcho_4129
PFAM: Tetratricopeptide TPR_4; KEGG: ade:Adeh_1603 lytic transglycosylase.
      
0.773
Lcho_4130
PFAM: cytochrome c class I; KEGG: bbr:BB4582 putative cytochrome c.
       0.773
Lcho_4131
KEGG: gur:Gura_2745 hypothetical protein.
       0.770
Lcho_4125
PFAM: NHL repeat containing protein; KEGG: afw:Anae109_1838 NHL repeat containing protein.
       0.718
Lcho_4120
PFAM: TPR repeat-containing protein; KEGG: cpt:CpB0720 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase.
       0.645
Lcho_4121
PFAM: cytochrome c assembly protein; KEGG: gsu:GSU0705 cytochrome c biogenesis protein, CcmF/CcyK/CcsA family.
       0.645
Lcho_4122
KEGG: nca:Noca_2201 ResB family protein.
       0.645
Lcho_4123
KEGG: rfr:Rfer_0259 hypothetical protein.
       0.645
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.