STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4137PFAM: cytochrome c class I; KEGG: rme:Rmet_6106 putative high-affinity Fe2+/Pb2+ permease. (320 aa)    
Predicted Functional Partners:
Lcho_2778
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: mpt:Mpe_A2477 putative cytochrome-c oxidase, subunit II.
  
 
 0.984
Lcho_2779
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: mpt:Mpe_A2478 putative cytochrome c oxidase (subunit I) transmembrane protein; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.979
Lcho_2776
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 
 0.919
Lcho_4135
PFAM: NHL repeat containing protein; KEGG: gme:Gmet_1869 NHL repeat protein.
 
 
 0.869
Lcho_4122
KEGG: nca:Noca_2201 ResB family protein.
 
  
 0.866
Lcho_4134
KEGG: gsu:GSU0618 cytochrome c family protein.
 
   
 0.838
Lcho_4123
KEGG: rfr:Rfer_0259 hypothetical protein.
 
   
 0.830
Lcho_0931
Cytochrome b/b6 domain; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.811
Lcho_4131
KEGG: gur:Gura_2745 hypothetical protein.
 
     0.811
Lcho_4124
PFAM: NHL repeat containing protein; KEGG: gsu:GSU3225 NHL repeat domain protein.
 
 
 0.808
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.