STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4141KEGG: mpt:Mpe_A0562 serine-pyruvate aminotransferase. (375 aa)    
Predicted Functional Partners:
Lcho_4140
PFAM: cyclic nucleotide-binding; KEGG: dac:Daci_5739 cyclic nucleotide-binding protein.
       0.693
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.654
purD
KEGG: mpt:Mpe_A1338 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; Belongs to the GARS family.
  
  
 0.645
Lcho_3859
L-lactate dehydrogenase (cytochrome); PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pol:Bpro_3678 L-lactate dehydrogenase (cytochrome).
  
 0.628
Lcho_2002
TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: pna:Pnap_2630 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.613
Lcho_3396
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: mpt:Mpe_A3103 glutamate synthase (ferredoxin).
  
  
 0.572
Lcho_0820
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pde:Pden_0191 glyoxalase/bleomycin resistance protein/dioxygenase.
  
   
 0.548
Lcho_4142
KEGG: ajs:Ajs_3366 integron integrase; Belongs to the 'phage' integrase family.
       0.492
Lcho_3568
TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: MaoC domain protein dehydratase; Aldehyde Dehydrogenase_; KEGG: pfl:PFL_3140 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase.
  
 0.466
Lcho_2893
TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: mpt:Mpe_A2105 acetolactate synthase 3 catalytic subunit.
  
 
 0.463
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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