STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4151PFAM: Integrase catalytic region; KEGG: sbl:Sbal_4350 integrase, catalytic region. (347 aa)    
Predicted Functional Partners:
Lcho_4150
PFAM: transposase IS3/IS911 family protein; KEGG: bpt:Bpet4600 putative transposase.
     0.947
Lcho_4152
KEGG: aav:Aave_4358 transposition helper protein.
 
     0.894
Lcho_1035
PFAM: transposase IS3/IS911 family protein; KEGG: aeh:Mlg_2336 hypothetical protein.
     0.777
Lcho_2307
KEGG: aav:Aave_4358 transposition helper protein.
 
     0.777
Lcho_3000
KEGG: aav:Aave_4358 transposition helper protein.
 
     0.777
Lcho_3129
PFAM: transposase IS3/IS911 family protein; KEGG: aeh:Mlg_2336 hypothetical protein.
     0.777
Lcho_4149
KEGG: aav:Aave_4358 transposition helper protein.
       0.605
Lcho_4153
PFAM: Integrase catalytic region; KEGG: aav:Aave_3792 integrase, catalytic region.
 
    
0.567
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.