STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4168KEGG: amt:Amet_3301 hypothetical protein. (366 aa)    
Predicted Functional Partners:
Lcho_4167
PFAM: type III restriction protein res subunit; KEGG: neu:NE2306 hypothetical protein.
 
     0.844
Lcho_4171
PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: eba:ebA2413 helicase (SNF2 family).
 
     0.832
Lcho_4169
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: neu:NE2309 adenine specific DNA methylase Mod.
 
     0.818
Lcho_4170
KEGG: tbd:Tbd_0934 hypothetical protein.
 
     0.794
Lcho_1310
PFAM: N-6 DNA methylase; KEGG: ajs:Ajs_2616 N-6 DNA methylase.
 
    0.722
Lcho_1311
PFAM: restriction modification system DNA specificity domain; KEGG: vei:Veis_1015 restriction modification system DNA specificity domain.
  
    0.665
Lcho_2219
KEGG: gsu:GSU0551 hypothetical protein.
   
    0.533
Lcho_4172
KEGG: aav:Aave_2031 hypothetical protein.
       0.509
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.