STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4191PFAM: protein of unknown function DUF433; KEGG: ava:Ava_1741 protein of unknown function DUF433. (76 aa)    
Predicted Functional Partners:
Lcho_4190
KEGG: rca:Rcas_0081 hypothetical protein.
 
   
 0.962
Lcho_1565
PFAM: PilT protein domain protein; KEGG: gvi:gll3555 hypothetical protein.
  
     0.725
Lcho_4192
Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.671
Lcho_0628
PFAM: protein of unknown function DUF820; KEGG: pna:Pnap_0294 protein of unknown function DUF820.
  
     0.652
Lcho_0540
PFAM: protein of unknown function DUF820; KEGG: hha:Hhal_1924 protein of unknown function DUF820.
  
     0.651
Lcho_2361
PFAM: protein of unknown function DUF820; KEGG: pna:Pnap_0294 protein of unknown function DUF820.
  
     0.649
Lcho_1966
KEGG: xom:XOO_0505 hypothetical protein.
  
   
 0.648
Lcho_1965
KEGG: xom:XOO_0504 hypothetical protein.
  
     0.611
Lcho_1566
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.605
Lcho_0626
KEGG: cch:Cag_0660 hypothetical protein.
  
     0.590
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.