STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4211KEGG: eba:ebA226 hypothetical protein. (170 aa)    
Predicted Functional Partners:
Lcho_4212
KEGG: mfa:Mfla_1283 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
       0.773
Lcho_4213
KEGG: azo:azo3684 putative periplasmic binding protein.
       0.773
Lcho_0713
KEGG: dac:Daci_5627 porin, gram-negative type.
  
     0.651
Lcho_4210
Multi-sensor hybrid histidine kinase; KEGG: dar:Daro_3006 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; SMART: PAS domain containing protein.
       0.610
Lcho_2423
KEGG: dac:Daci_5627 porin, gram-negative type.
  
     0.609
Lcho_2176
ATP-dependent transcriptional regulator, MalT-like, LuxR family; PFAM: regulatory protein LuxR; KEGG: bps:BPSS2291 GerE family regulatory protein.
  
     0.573
Lcho_0105
KEGG: ajs:Ajs_0499 hypothetical protein.
  
     0.517
Lcho_3412
KEGG: pol:Bpro_0746 outer membrane protein (porin)-like.
  
     0.512
Lcho_4214
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: mpt:Mpe_A1565 hypothetical protein.
       0.480
Lcho_2162
PFAM: protein of unknown function DUF1302; KEGG: gme:Gmet_2248 hypothetical protein.
  
     0.472
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.