STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4219TRAP dicarboxylate transporter- DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (370 aa)    
Predicted Functional Partners:
Lcho_4221
PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_4053 TRAP C4-dicarboxylate transport system permease DctM subunit.
 
  
 0.905
Lcho_4220
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: afw:Anae109_2923 tripartite ATP-independent periplasmic transporter DctQ component.
 
  
 0.904
Lcho_1780
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pna:Pnap_1503 TRAP dicarboxylate transporter, DctM subunit.
 
  
 0.799
Lcho_1781
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: dac:Daci_2246 tripartite ATP-independent periplasmic transporter DctQ component.
 
  
 0.799
Lcho_1224
TRAP dicarboxylate transporter- DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 
0.491
Lcho_4218
KEGG: pen:PSEEN4380 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase.
       0.456
Lcho_3779
KEGG: pol:Bpro_2626 hypothetical protein.
  
     0.417
Lcho_3780
KEGG: mpt:Mpe_A2434 hypothetical protein.
  
     0.414
Lcho_4217
PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: bmu:Bmul_0155 ATPase BadF/BadG/BcrA/BcrD type.
       0.401
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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