STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4232KEGG: bra:BRADO3400 conserved hypothetical protein; putative signal peptide. (92 aa)    
Predicted Functional Partners:
Lcho_0145
KEGG: dac:Daci_1743 hypothetical protein.
  
     0.570
Lcho_4233
PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A0307 putative transmembrane protein.
       0.536
Lcho_4231
PFAM: cyclic nucleotide-binding; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: mpt:Mpe_A0154 serine/threonine-protein kinase.
       0.485
Lcho_0142
KEGG: dac:Daci_1740 hypothetical protein.
  
     0.424
Lcho_0922
PFAM: protein of unknown function DUF6 transmembrane; KEGG: mpt:Mpe_A3564 putative transmembrane protein.
  
     0.421
Lcho_3605
PFAM: aminotransferase class-III; KEGG: bbt:BBta_6209 putative glutamate-1-semialdehyde 2,1-aminomutase (GSA) (glutamate-1-semialdehyde aminotransferase); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
     0.418
Lcho_4213
KEGG: azo:azo3684 putative periplasmic binding protein.
  
     0.400
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.