STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4236KEGG: mpt:Mpe_A0310 hypothetical protein. (205 aa)    
Predicted Functional Partners:
Lcho_4235
KEGG: pol:Bpro_0248 ferredoxin-like.
 
     0.823
Lcho_4234
PFAM: VanZ family protein; KEGG: mpt:Mpe_A0308 hypothetical protein.
       0.795
Lcho_4233
PFAM: conserved hypothetical protein; KEGG: mpt:Mpe_A0307 putative transmembrane protein.
 
     0.761
Lcho_4237
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: mpt:Mpe_A0311 serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
 
     0.633
Lcho_3940
TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: mpt:Mpe_A0173 putative glutamate--cysteine ligase.
  
     0.549
Lcho_0905
KEGG: mpt:Mpe_A3028 hypothetical protein.
 
     0.504
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.483
Lcho_4238
PFAM: aminotransferase class IV; KEGG: mpt:Mpe_A0312 putative class IV aminotransferase.
       0.439
Lcho_4239
PFAM: protein of unknown function DUF493; KEGG: bbr:BB0170 hypothetical protein; Belongs to the UPF0250 family.
       0.414
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.