STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4244KEGG: pna:Pnap_0435 putative lipase transmembrane protein. (327 aa)    
Predicted Functional Partners:
Lcho_4245
PFAM: nuclear protein SET; KEGG: mpt:Mpe_A0045 hypothetical protein.
  
    0.657
Lcho_2060
KEGG: mpt:Mpe_A1619 putative transmembrane protein.
  
     0.611
Lcho_4243
KEGG: jan:Jann_0111 hypothetical protein.
       0.576
rpmA
PFAM: ribosomal protein L27; KEGG: mpt:Mpe_A0512 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.541
rplL
Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
   
   0.537
rpsP
PFAM: ribosomal protein S16; KEGG: mpt:Mpe_A1104 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.530
rpmG
PFAM: ribosomal protein L33; KEGG: dar:Daro_3144 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.530
rpmB
PFAM: ribosomal protein L28; KEGG: mpt:Mpe_A1117 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
    
   0.530
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
   0.530
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
    
   0.530
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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