STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4258KEGG: bch:Bcen2424_3352 PilT protein domain protein. (132 aa)    
Predicted Functional Partners:
Lcho_4259
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: bch:Bcen2424_3351 transcriptional regulator, AbrB family.
 
     0.792
Lcho_4257
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
       0.773
vapC-2
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.680
Lcho_3171
KEGG: eba:ebB86 RelE-like cytotoxic translational repressor of toxin-antitoxin stability system.
  
     0.592
Lcho_3172
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: vei:Veis_0468 helix-turn-helix domain protein.
  
     0.574
Lcho_0626
KEGG: cch:Cag_0660 hypothetical protein.
  
     0.527
vapC-3
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.499
Lcho_1565
PFAM: PilT protein domain protein; KEGG: gvi:gll3555 hypothetical protein.
  
     0.492
Lcho_4256
PFAM: protein of unknown function DUF59; KEGG: mag:amb1263 predicted metal-sulfur cluster biosynthetic enzyme.
       0.488
Lcho_2218
KEGG: rle:pRL70166 hypothetical protein.
  
     0.483
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.