STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4313PFAM: peptidase M12A astacin; peptidase domain protein; SMART: peptidase metallopeptidase; KEGG: fgr:FG08198.1 hypothetical protein. (340 aa)    
Predicted Functional Partners:
Lcho_4120
PFAM: TPR repeat-containing protein; KEGG: cpt:CpB0720 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase.
    
 
 0.676
pheT
phenylalanyl-tRNA synthetase, beta subunit; KEGG: mpt:Mpe_A1883 phenylalanine--tRNA ligase; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit.
   
 
 0.510
Lcho_4312
KEGG: reu:Reut_B5395 probable transmembrane protein.
       0.478
Lcho_2344
PFAM: glycoside hydrolase family 5; KEGG: psa:PST_2494 endoglucanase precursor(endo-1,4-beta-glucanase)protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
   
 0.469
Lcho_0222
KEGG: pca:Pcar_1811 hypothetical protein.
 
  
 0.419
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
 
 0.414
Lcho_1835
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: mpt:Mpe_A1640 P1 ATPase/HMA domain.
     
 0.403
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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