STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4315PFAM: glucose sorbosone dehydrogenase; KEGG: mpt:Mpe_A2752 glucose/sorbosone dehydrogenase. (406 aa)    
Predicted Functional Partners:
Lcho_4314
KEGG: mpt:Mpe_A1035 hypothetical protein.
       0.682
Lcho_4316
PFAM: inositol monophosphatase; KEGG: smd:Smed_3968 inositol-phosphate phosphatase.
       0.485
Lcho_4317
PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMb20365 putative ABC transporter iron-binding protein.
       0.418
Lcho_4318
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_1364 binding-protein-dependent transport systems inner membrane component.
       0.418
fbpC
ABC transporter-related protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
       0.418
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.