STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4322PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1109 binding-protein-dependent transport systems inner membrane component. (304 aa)    
Predicted Functional Partners:
Lcho_4323
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B2081 ABC sugar transporter, inner membrane subunit.
 
 0.995
Lcho_4324
ABC transporter-related protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_1107 ABC transporter related; Belongs to the ABC transporter superfamily.
 
 0.991
Lcho_4321
PFAM: extracellular solute-binding protein family 1; KEGG: bxe:Bxe_B2083 ABC sugar transporter, periplasmic ligand binding protein.
 
 0.990
Lcho_1693
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pna:Pnap_3692 binding-protein-dependent transport systems inner membrane component.
 
 0.980
Lcho_1695
PFAM: extracellular solute-binding protein family 1; KEGG: pna:Pnap_3689 extracellular solute-binding protein, family 1.
 
 0.978
Lcho_1692
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bte:BTH_I1556 maltose ABC transporter, ATP-binding protein, putative.
 
 0.976
Lcho_3302
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rle:pRL100256 putative ATP-binding component of ABC transporter.
 
 0.967
Lcho_1694
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1096 binding-protein-dependent transport systems inner membrane component.
  
  
 
0.906
Lcho_3301
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmw:Mmwyl1_0230 binding-protein-dependent transport systems inner membrane component.
 
 
 0.904
Lcho_3241
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO0272 putative binding-protein-dependent transport protein.
 
 
 0.903
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.