STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4329PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bxe:Bxe_A3671 putative oxidoreductase. (387 aa)    
Predicted Functional Partners:
Lcho_4328
PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: bra:BRADO0446 conserved hypothetical protein; putative xylose isomerase-like.
 
  
 0.955
Lcho_4327
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: atc:AGR_L_982 hypothetical protein.
 
  
 0.919
Lcho_4330
PFAM: glycoside hydrolase family 3 domain protein; KEGG: ret:RHE_PF00473 beta-glucosidase protein; Belongs to the glycosyl hydrolase 3 family.
       0.698
Lcho_4326
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: smd:Smed_2952 oxidoreductase domain protein.
 
    
0.652
Lcho_3315
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bur:Bcep18194_A4566 acetolactate synthase; Belongs to the TPP enzyme family.
 
  
 0.582
Lcho_4325
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rfr:Rfer_1112 transcriptional regulator, LacI family.
 
     0.527
Lcho_0408
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pol:Bpro_1458 xylose isomerase-like TIM barrel.
 
  
 0.517
Lcho_3317
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: bam:Bamb_1300 myo-inositol catabolism IolB domain protein.
  
  
 0.502
Lcho_3314
PFAM: PfkB domain protein; KEGG: bmu:Bmul_1892 PfkB domain protein.
 
  
 0.499
Lcho_3316
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bur:Bcep18194_A4565 xylose isomerase-like TIM barrel.
 
  
 0.481
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.