STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4347PFAM: ferredoxin; KEGG: reh:H16_B1886 ferredoxin. (111 aa)    
Predicted Functional Partners:
Lcho_4349
PFAM: ferredoxin; KEGG: reu:Reut_B3759 ferredoxin.
 
    0.933
Lcho_3661
TIGRFAM: benzoyl-CoA oxygenase/reductase, BoxA protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pna:Pnap_2942 oxidoreductase FAD/NAD(P)-binding domain protein.
 
 
 0.888
Lcho_4350
PFAM: TENA/THI-4 domain protein; KEGG: reu:Reut_B3762 coenzyme PQQ synthesis C.
 
     0.839
Lcho_4348
KEGG: rme:Rmet_3637 hypothetical protein.
  
    0.824
Lcho_1462
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rfr:Rfer_3858 respiratory-chain NADH dehydrogenase domain, 51 kDa subunit.
  
 
 0.808
Lcho_4345
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rme:Rmet_3629 transcriptional regulator, GntR family.
 
   
 0.775
Lcho_4346
PFAM: protein of unknown function DUF81; KEGG: reh:H16_B1882 hypothetical membrane spanning protein.
 
     0.766
Lcho_4344
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: rme:Rmet_3634 ornithine cyclodeaminase/mu-crystallin.
 
    0.644
Lcho_4352
PFAM: protein of unknown function DUF336; KEGG: rme:Rmet_3631 protein of unknown function DUF336.
 
     0.629
Lcho_4354
KEGG: reh:H16_B1883 hypothetical membrane spanning protein.
 
     0.607
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.