STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_4350PFAM: TENA/THI-4 domain protein; KEGG: reu:Reut_B3762 coenzyme PQQ synthesis C. (243 aa)    
Predicted Functional Partners:
Lcho_4352
PFAM: protein of unknown function DUF336; KEGG: rme:Rmet_3631 protein of unknown function DUF336.
 
    0.914
Lcho_4349
PFAM: ferredoxin; KEGG: reu:Reut_B3759 ferredoxin.
 
     0.856
Lcho_4347
PFAM: ferredoxin; KEGG: reh:H16_B1886 ferredoxin.
 
     0.839
Lcho_4354
KEGG: reh:H16_B1883 hypothetical membrane spanning protein.
 
     0.767
Lcho_4351
PFAM: Aldehyde Dehydrogenase_; KEGG: reu:Reut_B3763 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
 0.690
Lcho_4346
PFAM: protein of unknown function DUF81; KEGG: reh:H16_B1882 hypothetical membrane spanning protein.
 
     0.580
Lcho_1803
KEGG: reh:H16_B1261 hypothetical protein.
  
     0.509
Lcho_2188
Hypothetical protein; KEGG: reh:H16_B2382 putative helicase.
  
     0.508
Lcho_0797
PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: pol:Bpro_0983 Rieske (2Fe-2S) region.
  
     0.500
Lcho_4353
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: reh:H16_B1877 putative oxidoreductase.
       0.490
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.