STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB63632.1Sodium/proton antiporter, CPA1 family. (396 aa)    
Predicted Functional Partners:
SED27987.1
Ca2+-binding protein, EF-hand superfamily.
   
 0.785
SEC28158.1
Z1 domain-containing protein.
   
 0.637
SEB63569.1
Mg2+-importing ATPase.
   
 
 0.558
SEC36467.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
   
 0.490
SEC55818.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
   
 0.490
SEC55855.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
   
 0.490
SEB63666.1
Protein of unknown function; Manually curated.
       0.464
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.432
SED41036.1
Mg2+-importing ATPase.
    
 
 0.430
SEC11394.1
Hypothetical protein.
    
 0.427
Your Current Organism:
Pseudomonas mohnii
NCBI taxonomy Id: 395600
Other names: Arthrobacter sp. BDR2P2B2-M, CCUG 53115, DSM 18327, P. mohnii, Pseudomonas mohnii Camara et al. 2007, strain IpA-2
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