STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB67321.1EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant). (510 aa)    
Predicted Functional Partners:
SED59901.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.965
SEB79005.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.960
SED23792.1
Diguanylate cyclase with PAS/PAC and GAF sensors.
 0.948
SEC66297.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.946
SEC08946.1
Diguanylate cyclase with PAS/PAC sensor.
 
 0.939
SED04209.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.898
SEC05318.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.889
SEC34779.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.889
SEB79188.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.887
SED67068.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.875
Your Current Organism:
Pseudomonas mohnii
NCBI taxonomy Id: 395600
Other names: Arthrobacter sp. BDR2P2B2-M, CCUG 53115, DSM 18327, P. mohnii, Pseudomonas mohnii Camara et al. 2007, strain IpA-2
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