STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB70907.1Protein of unknown function. (125 aa)    
Predicted Functional Partners:
SEC00115.1
Hypothetical protein.
  
 
 0.780
SEB99591.1
Hypothetical protein.
   
   0.716
SED33320.1
Carbohydrate binding domain-containing protein.
   
   0.716
SEB70742.1
Protein of unknown function.
   
   0.649
SEB97534.1
Protein of unknown function.
   
   0.649
SEB98812.1
Protein of unknown function.
   
   0.649
SEC21934.1
Type I secretion C-terminal target domain (VC_A0849 subclass).
   
   0.649
algL
poly(beta-D-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism; Belongs to the polysaccharide lyase 5 family.
   
   0.649
SEC88400.1
Alginate lyase.
   
   0.649
SED26368.1
Protein of unknown function.
   
   0.649
Your Current Organism:
Pseudomonas mohnii
NCBI taxonomy Id: 395600
Other names: Arthrobacter sp. BDR2P2B2-M, CCUG 53115, DSM 18327, P. mohnii, Pseudomonas mohnii Camara et al. 2007, strain IpA-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.