STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB71539.1Putative ABC transport system ATP-binding protein. (617 aa)    
Predicted Functional Partners:
SEC22015.1
ATP-binding cassette, subfamily C, LapB.
 
 
0.923
SEB71504.1
ATP-binding cassette, subfamily B.
 
    
0.830
SEC67907.1
Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.
  
 
 0.807
SEC44254.1
Deoxyribodipyrimidine photo-lyase type I.
   
 
 0.690
SEB71576.1
2'-hydroxybiphenyl-2-sulfinate desulfinase.
 
    0.683
SED28892.1
Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
   
 
 0.678
SEC36102.1
Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
    
 
 0.670
SEC71001.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
  
 
 0.669
SED08823.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
  
 
 0.669
infB
Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
    
 
 0.668
Your Current Organism:
Pseudomonas mohnii
NCBI taxonomy Id: 395600
Other names: Arthrobacter sp. BDR2P2B2-M, CCUG 53115, DSM 18327, P. mohnii, Pseudomonas mohnii Camara et al. 2007, strain IpA-2
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