STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB99397.1Putative chitinase. (177 aa)    
Predicted Functional Partners:
SEB99474.1
Hypothetical protein.
  
    0.810
SEB99435.1
Protein of unknown function.
     
 0.782
SEB99359.1
Protein of unknown function.
       0.779
SEB99505.1
Hypothetical protein.
       0.773
SEB99628.1
Phage tail tape measure protein, lambda family.
  
    0.713
SEB66722.1
Fibronectin type III domain-containing protein.
  
  
 0.646
SEB92820.1
Hypothetical protein.
  
  
  0.618
SED19578.1
Holin, hol family.
   
    0.576
SED33286.1
Phage tail tape measure protein, lambda family.
  
    0.552
SEB99315.1
Lecithin retinol acyltransferase.
       0.512
Your Current Organism:
Pseudomonas mohnii
NCBI taxonomy Id: 395600
Other names: Arthrobacter sp. BDR2P2B2-M, CCUG 53115, DSM 18327, P. mohnii, Pseudomonas mohnii Camara et al. 2007, strain IpA-2
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.