Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEB68119.1 | SEC63813.1 | SAMN05216205_0325 | SAMN05216205_2848 | DNA topoisomerase-1. | ATP-dependent DNA helicase, RecQ-like. | 0.944 |
SEB68119.1 | polA | SAMN05216205_0325 | SAMN05216205_3028 | DNA topoisomerase-1. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.548 |
SEB68119.1 | recA | SAMN05216205_0325 | SAMN05216205_4505 | DNA topoisomerase-1. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.481 |
SEB68119.1 | sbcD | SAMN05216205_0325 | SAMN05216205_5923 | DNA topoisomerase-1. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.718 |
SEC46093.1 | SEC63813.1 | SAMN05216205_2384 | SAMN05216205_2848 | Hypothetical protein. | ATP-dependent DNA helicase, RecQ-like. | 0.912 |
SEC46093.1 | SEC75777.1 | SAMN05216205_2384 | SAMN05216205_3184 | Hypothetical protein. | ATP-dependent DNA helicase UvrD. | 0.667 |
SEC46093.1 | SED59281.1 | SAMN05216205_2384 | SAMN05216205_5655 | Hypothetical protein. | DNA topoisomerase-3. | 0.820 |
SEC46093.1 | polA | SAMN05216205_2384 | SAMN05216205_3028 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
SEC46093.1 | recA | SAMN05216205_2384 | SAMN05216205_4505 | Hypothetical protein. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.898 |
SEC46093.1 | sbcD | SAMN05216205_2384 | SAMN05216205_5923 | Hypothetical protein. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.998 |
SEC46093.1 | topA | SAMN05216205_2384 | SAMN05216205_1391 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.856 |
SEC63813.1 | SEB68119.1 | SAMN05216205_2848 | SAMN05216205_0325 | ATP-dependent DNA helicase, RecQ-like. | DNA topoisomerase-1. | 0.944 |
SEC63813.1 | SEC46093.1 | SAMN05216205_2848 | SAMN05216205_2384 | ATP-dependent DNA helicase, RecQ-like. | Hypothetical protein. | 0.912 |
SEC63813.1 | SEC75777.1 | SAMN05216205_2848 | SAMN05216205_3184 | ATP-dependent DNA helicase, RecQ-like. | ATP-dependent DNA helicase UvrD. | 0.915 |
SEC63813.1 | SED59281.1 | SAMN05216205_2848 | SAMN05216205_5655 | ATP-dependent DNA helicase, RecQ-like. | DNA topoisomerase-3. | 0.990 |
SEC63813.1 | SED68310.1 | SAMN05216205_2848 | SAMN05216205_5922 | ATP-dependent DNA helicase, RecQ-like. | Exonuclease SbcC. | 0.913 |
SEC63813.1 | mutL | SAMN05216205_2848 | SAMN05216205_2583 | ATP-dependent DNA helicase, RecQ-like. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.921 |
SEC63813.1 | polA | SAMN05216205_2848 | SAMN05216205_3028 | ATP-dependent DNA helicase, RecQ-like. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.993 |
SEC63813.1 | recA | SAMN05216205_2848 | SAMN05216205_4505 | ATP-dependent DNA helicase, RecQ-like. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.983 |
SEC63813.1 | sbcD | SAMN05216205_2848 | SAMN05216205_5923 | ATP-dependent DNA helicase, RecQ-like. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.984 |
page 1 of 5