STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC89340.1Gamma-butyrobetaine dioxygenase. (387 aa)    
Predicted Functional Partners:
lcdH
Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
  
 0.920
SEC89378.1
acyl-CoA thioester hydrolase.
 
  
  0.910
SEC67907.1
Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.
  
  
 0.748
tauB
Taurine transport system ATP-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
  
 
  0.738
SED11737.1
Taurine catabolism dioxygenase TauD, TfdA family.
  
     0.728
SEC84517.1
Phosphonate degradation operons associated HDIG domain protein.
     0.724
SEB78273.1
Toluate 1,2-dioxygenase electron transfer component.
   
 
  0.698
SEC34742.1
NAD(P)H-flavin reductase.
   
 
  0.698
SEC81429.1
CDP-4-dehydro-6-deoxyglucose reductase.
   
 
  0.698
SEC90066.1
Ferredoxin-NADP reductase.
  
  
  0.696
Your Current Organism:
Pseudomonas mohnii
NCBI taxonomy Id: 395600
Other names: Arthrobacter sp. BDR2P2B2-M, CCUG 53115, DSM 18327, P. mohnii, Pseudomonas mohnii Camara et al. 2007, strain IpA-2
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