STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED28681.1Competence protein ComEC. (744 aa)    
Predicted Functional Partners:
SEC71654.1
DNA protecting protein DprA.
 
  
 0.906
SEC91417.1
comF family protein.
 
  
 0.885
SED02980.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.863
SED03009.1
Type IV pilus assembly protein PilC.
 
  
 0.789
SEB93881.1
General secretion pathway protein F.
 
  
 0.783
SEC58167.1
General secretion pathway protein F.
  
  
 0.754
SED35320.1
Competence protein ComEA.
 
  
 0.749
SEC98620.1
DNA polymerase III, delta subunit.
 
   
 0.741
SEB93482.1
General secretion pathway protein E.
 
  
 0.737
SEC78475.1
DNA repair protein RadC; Belongs to the UPF0758 family.
 
  
 0.722
Your Current Organism:
Pseudomonas mohnii
NCBI taxonomy Id: 395600
Other names: Arthrobacter sp. BDR2P2B2-M, CCUG 53115, DSM 18327, P. mohnii, Pseudomonas mohnii Camara et al. 2007, strain IpA-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.