Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SED03584.1 | SED34375.1 | SAMN05216205_4002 | SAMN05216205_4969 | Aspartate/methionine/tyrosine aminotransferase. | Chorismate mutase. | 0.923 |
SED03584.1 | aroA | SAMN05216205_4002 | SAMN05216205_4971 | Aspartate/methionine/tyrosine aminotransferase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.854 |
SED03584.1 | aroC | SAMN05216205_4002 | SAMN05216205_1524 | Aspartate/methionine/tyrosine aminotransferase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.475 |
SED03584.1 | hisC-2 | SAMN05216205_4002 | SAMN05216205_4970 | Aspartate/methionine/tyrosine aminotransferase. | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.539 |
SED34375.1 | SED03584.1 | SAMN05216205_4969 | SAMN05216205_4002 | Chorismate mutase. | Aspartate/methionine/tyrosine aminotransferase. | 0.923 |
SED34375.1 | SED37377.1 | SAMN05216205_4969 | SAMN05216205_5050 | Chorismate mutase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.992 |
SED34375.1 | aroA | SAMN05216205_4969 | SAMN05216205_4971 | Chorismate mutase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.999 |
SED34375.1 | aroB | SAMN05216205_4969 | SAMN05216205_2707 | Chorismate mutase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.920 |
SED34375.1 | aroC | SAMN05216205_4969 | SAMN05216205_1524 | Chorismate mutase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.958 |
SED34375.1 | aroK | SAMN05216205_4969 | SAMN05216205_2709 | Chorismate mutase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.934 |
SED34375.1 | cmk | SAMN05216205_4969 | SAMN05216205_4972 | Chorismate mutase. | Cytidylate kinase. | 0.973 |
SED34375.1 | flgI | SAMN05216205_4969 | SAMN05216205_1738 | Chorismate mutase. | Flagellar P-ring protein precursor FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. | 0.982 |
SED34375.1 | hisC-2 | SAMN05216205_4969 | SAMN05216205_4970 | Chorismate mutase. | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.967 |
SED34375.1 | serC | SAMN05216205_4969 | SAMN05216205_4968 | Chorismate mutase. | Phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.982 |
SED37377.1 | SED34375.1 | SAMN05216205_5050 | SAMN05216205_4969 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Chorismate mutase. | 0.992 |
SED37377.1 | aroA | SAMN05216205_5050 | SAMN05216205_4971 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.553 |
SED37377.1 | aroB | SAMN05216205_5050 | SAMN05216205_2707 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.837 |
SED37377.1 | aroC | SAMN05216205_5050 | SAMN05216205_1524 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.404 |
SED37377.1 | aroK | SAMN05216205_5050 | SAMN05216205_2709 | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.746 |
aroA | SED03584.1 | SAMN05216205_4971 | SAMN05216205_4002 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Aspartate/methionine/tyrosine aminotransferase. | 0.854 |
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