STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED48845.1tRNA 2-thiouridine synthesizing protein E; Part of a sulfur-relay system. (111 aa)    
Predicted Functional Partners:
SED48878.1
tRNA 2-thiouridine synthesizing protein B.
 
 0.994
SED48933.1
tRNA 2-thiouridine synthesizing protein D.
 
 
 0.991
SED48908.1
tRNA 2-thiouridine synthesizing protein C; Belongs to the DsrF/TusC family.
 
 
 0.989
SED48800.1
Anthranilate phosphoribosyltransferase.
 
    0.909
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
   
 0.851
SED02710.1
NADH dehydrogenase.
    
 0.701
SEC89838.1
Fe-S oxidoreductase.
   
 0.665
SEB62987.1
MSMEG_0572 family protein.
     
 0.631
SED48767.1
Putative glutathione S-transferase.
       0.612
SED05353.1
D-lactate dehydrogenase.
 
 
 0.602
Your Current Organism:
Pseudomonas mohnii
NCBI taxonomy Id: 395600
Other names: Arthrobacter sp. BDR2P2B2-M, CCUG 53115, DSM 18327, P. mohnii, Pseudomonas mohnii Camara et al. 2007, strain IpA-2
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