STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACL42663.1PFAM: metallophosphoesterase; KEGG: amr:AM1_3313 hypothetical protein. (314 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 0.983
ACL46497.1
KEGG: npu:Npun_R1321 hypothetical protein.
 
 0.785
ACL43667.1
KEGG: npu:Npun_F0560 hypothetical protein.
  
     0.762
ACL44091.1
PFAM: FAD dependent oxidoreductase; KEGG: ter:Tery_0494 FAD dependent oxidoreductase.
  
    0.756
ACL44701.1
PFAM: SMC domain protein; KEGG: amr:AM1_2823 RecF/RecN/SMC domain-containing protein.
  
 0.749
ACL45370.1
KEGG: tel:tll2361 hypothetical protein.
  
 0.749
sbcC
Exonuclease SbcC; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SMC family. SbcC subfamily.
  
 0.749
ACL42818.1
PFAM: conserved hypothetical protein; KEGG: amr:AM1_4580 hypothetical protein.
  
     0.732
ACL46840.1
KEGG: ava:Ava_0221 hypothetical protein.
  
 
   0.731
ACL47019.1
PFAM: GUN4 domain protein; KEGG: amr:AM1_0701 GUN4-like family protein.
  
     0.712
Your Current Organism:
Cyanothece sp. PCC7425
NCBI taxonomy Id: 395961
Other names: C. sp. PCC 7425, Cyanothece sp. ATCC 29141, Cyanothece sp. PCC 7425, Synechococcus sp. PCC 7425
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.