STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACL42787.1Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: tel:tlr1497 hypothetical protein. (287 aa)    
Predicted Functional Partners:
ACL44103.1
TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: tel:tlr0938 rod shape-determining protein.
 
 
 0.977
rplW
Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
    
 
 0.821
rplV
Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
    
   0.819
rpmC
PFAM: ribosomal protein L29; KEGG: tel:tsr0089 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
    
   0.819
ACL44102.1
PFAM: Rod shape-determining protein MreC; KEGG: amr:AM1_5188 rod shape-determining protein MreC, putative.
 
 
 
 0.743
ACL46159.1
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: mar:MAE_22470 CDP-alcohol phosphatidyltransferase.
  
    0.737
ACL47170.1
TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ana:all4063 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (phosphatidylglycerophosphate synthase); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.737
ACL42786.1
Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: npu:Npun_R5816 pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.
       0.731
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
  
   0.716
ACL47077.1
KEGG: amr:AM1_6036 hypothetical protein.
  
   0.716
Your Current Organism:
Cyanothece sp. PCC7425
NCBI taxonomy Id: 395961
Other names: C. sp. PCC 7425, Cyanothece sp. ATCC 29141, Cyanothece sp. PCC 7425, Synechococcus sp. PCC 7425
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