STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACL43090.1PFAM: WD-40 repeat protein; KEGG: amr:AM1_2505 WD repeat-containing protein. (1190 aa)    
Predicted Functional Partners:
ACL43170.1
PFAM: peptidase S1 and S6 chymotrypsin/Hap; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: amr:AM1_G0032 TPR repeat-containing protein.
 
  0.729
ACL44786.1
KEGG: amr:AM1_2681 hypothetical protein.
  
 
 0.726
ACL43174.1
PFAM: beta-lactamase domain protein; KEGG: npu:Npun_R1387 beta-lactamase domain-containing protein.
  
 
 0.717
ACL46786.1
KEGG: tel:tll0141 hypothetical protein.
 
     0.645
ACL45966.1
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: amr:AM1_5249 protease, putative.
  
  0.637
ACL45701.1
KEGG: amr:AM1_4973 hypothetical protein.
  
   0.600
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.581
ACL46852.1
PFAM: metallophosphoesterase; KEGG: ava:Ava_1593 metallophosphoesterase.
  
 0.514
ACL43089.1
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mem:Memar_2467 anti-sigma-factor antagonist.
       0.470
ACL43228.1
PFAM: protein of unknown function DUF1232; KEGG: ter:Tery_4803 hypothetical protein.
  
     0.470
Your Current Organism:
Cyanothece sp. PCC7425
NCBI taxonomy Id: 395961
Other names: C. sp. PCC 7425, Cyanothece sp. ATCC 29141, Cyanothece sp. PCC 7425, Synechococcus sp. PCC 7425
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.