STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACL44588.1Ycf48-like protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity. (333 aa)    
Predicted Functional Partners:
ACL42889.1
PFAM: photosystem II manganese-stabilizing protein PsbO; KEGG: tel:tll0444 photosystem II manganese-stabilizing polypeptide.
  
   
 0.814
psb28
TIGRFAM: photosystem II reaction center protein Psb28; PFAM: photosystem II protein PsbW class I; KEGG: tel:tlr0493 photosystem II Psb28 protein; Belongs to the Psb28 family.
  
   
 0.814
ACL43975.1
KEGG: mar:MAE_06290 hypothetical protein.
  
   
 0.806
ACL46557.1
PFAM: photosystem I protein PsaD; KEGG: tel:tll1724 photosystem I subunit II.
  
   
 0.797
ACL44587.1
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: npu:Npun_F5549 rubredoxin-type Fe(Cys)4 protein; Belongs to the rubredoxin family.
 
   
 0.791
psb27
Photosystem II protein Psb27; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
  
   
 0.765
ACL43168.1
PFAM: protein of unknown function DUF1092; KEGG: amr:AM1_3535 hypothetical protein.
  
     0.763
ACL43851.1
PFAM: protein of unknown function YGGT; KEGG: ter:Tery_3708 protein of unknown function YGGT.
  
     0.759
ACL43296.1
KEGG: ter:Tery_3619 hypothetical protein.
  
     0.757
ACL43027.1
PFAM: protein of unknown function DUF1350; KEGG: amr:AM1_3931 hypothetical protein.
  
     0.751
Your Current Organism:
Cyanothece sp. PCC7425
NCBI taxonomy Id: 395961
Other names: C. sp. PCC 7425, Cyanothece sp. ATCC 29141, Cyanothece sp. PCC 7425, Synechococcus sp. PCC 7425
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