STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACL44786.1KEGG: amr:AM1_2681 hypothetical protein. (499 aa)    
Predicted Functional Partners:
ACL44785.1
PFAM: zinc finger SWIM domain protein; KEGG: amr:AM1_2680 zinc finger SWIM domain-containing protein.
     0.992
ACL44787.1
PFAM: ATPase associated with various cellular activities AAA_5; KEGG: amr:AM1_2502 ATPase associated with various cellular activities.
 
     0.896
ACL44788.1
KEGG: amr:AM1_4013 hypothetical protein.
 
     0.894
ACL44986.1
KEGG: npu:Npun_F0315 hypothetical protein.
   
 0.889
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
  0.883
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.876
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.876
ACL44789.1
PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: amr:AM1_3312 hypothetical protein.
 
    0.872
ACL43329.1
KEGG: ana:alr4075 putative ATP-dependent DNA helicase DinG.
    
  0.832
ACL44078.1
PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: amr:AM1_2461 type III restriction enzyme, res subunit.
    
  0.774
Your Current Organism:
Cyanothece sp. PCC7425
NCBI taxonomy Id: 395961
Other names: C. sp. PCC 7425, Cyanothece sp. ATCC 29141, Cyanothece sp. PCC 7425, Synechococcus sp. PCC 7425
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