Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0033PFAM: regulatory protein TetR; KEGG: kra:Krad_2790 transcriptional regulator, TetR family. (221 aa)    
Predicted Functional Partners:
Bind_0032
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: kra:Krad_2789 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.849
Bind_1892
PFAM: regulatory protein TetR; KEGG: kra:Krad_0136 transcriptional regulator, TetR family.
  
     0.599
Bind_2514
Putative transcriptional regulator, TetR family; KEGG: gdi:GDI0537 hypothetical protein.
  
     0.548
Bind_0192
KEGG: pnu:Pnuc_0538 hypothetical protein.
  
     0.537
Bind_0322
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: swi:Swit_3223 hypothetical protein.
  
     0.482
Bind_0846
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; aminotransferase class-III; phosphopantetheine-binding; Beta-ketoacyl synthase; Acyl transferase; KEGG: mes:Meso_2580 amino acid adenylation domain; Belongs to the ATP-dependent AMP-binding enzyme family.
  
   
 0.470
Bind_0027
PFAM: regulatory protein TetR; KEGG: scl:sce2153 transcriptional regulator, TetR family.
  
     0.430
Bind_1566
KEGG: bbt:BBta_0026 uridine kinase.
  
     0.411
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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