Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_0086PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:bll7547 hypothetical protein. (307 aa)    
Predicted Functional Partners:
Bind_0051
KEGG: mex:Mext_1537 hypothetical protein.
 
     0.676
Bind_2842
TIGRFAM: conserved hypothetical membrane protein; KEGG: mex:Mext_1457 hypothetical protein.
  
     0.666
Bind_3475
KEGG: mex:Mext_1456 hypothetical protein.
  
     0.627
Bind_1037
PFAM: 2-deoxycytidine 5-triphosphate deaminase; KEGG: rpd:RPD_0904 2'-deoxycytidine 5'-triphosphate deaminase.
  
     0.616
rpmJ
TIGRFAM: ribosomal protein L36; KEGG: nwi:Nwi_0983 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
   0.567
hisS
Histidine--tRNA ligase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: xau:Xaut_1216 histidyl-tRNA synthetase.
  
     0.509
Bind_2843
KEGG: mex:Mext_1458 protein of unknown function DUF58.
 
  
 0.500
Bind_0755
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1065 TPR repeat protein.
 
 
 0.489
Bind_1190
PFAM: HemY domain protein; KEGG: mex:Mext_0735 HemY domain protein.
 
     0.467
Bind_1656
PFAM: protein of unknown function DUF1491; KEGG: rpe:RPE_1874 protein of unknown function DUF1491.
  
     0.447
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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