STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0089PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: reh:H16_B2164 NADH:flavin oxidoreductase. (370 aa)    
Predicted Functional Partners:
Bind_0905
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ava:Ava_4760 flavin oxidoreductase/NADH oxidase.
  
  
 
0.911
Bind_1834
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bxe:Bxe_B1269 putative NADH-flavin oxidoreductase / NADH oxidase.
  
  
 
0.910
Bind_0090
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: gdi:GDI3479 putative nucleoside-diphosphate-sugar epimerase dehydratase protein.
       0.773
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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