STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0093PFAM: protein of unknown function DUF1013; KEGG: azc:AZC_1470 hypothetical protein. (236 aa)    
Predicted Functional Partners:
Bind_0771
PFAM: protein of unknown function DUF1321; KEGG: mex:Mext_2662 protein of unknown function DUF1321.
  
   
 0.773
lysS
KEGG: xau:Xaut_2384 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase class 1c; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.768
Bind_3111
PFAM: import inner membrane translocase subunit Tim44; KEGG: mex:Mext_1560 import inner membrane translocase subunit Tim44.
  
     0.768
Bind_3227
KEGG: azc:AZC_0441 hypothetical protein; Belongs to the UPF0335 family.
  
   
 0.702
Bind_0758
KEGG: bja:blr1340 hypothetical protein.
  
     0.698
Bind_2174
TIGRFAM: double-strand break repair protein AddB; KEGG: mex:Mext_4439 double-strand break repair protein AddB.
  
     0.692
Bind_2497
KEGG: bbt:BBta_4248 hypothetical protein.
  
   
 0.692
Bind_2175
TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: pla:Plav_0138 double-strand break repair helicase AddA; Belongs to the helicase family. UvrD subfamily.
  
     0.673
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.662
Bind_0510
PFAM: protein of unknown function DUF1058; KEGG: azc:AZC_0237 hypothetical protein.
  
     0.659
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.