STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0100TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: bra:BRADO3543 SufD, needed for FhuF Fe-S center production/stability. (444 aa)    
Predicted Functional Partners:
Bind_0099
KEGG: mex:Mext_3978 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.999
Bind_0098
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: azc:AZC_1044 FeS assembly SufB protein.
 
 
0.998
Bind_0101
TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: bra:BRADO5444 cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.961
Bind_1232
TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: mag:amb1849 probable cysteine desulfurase 1; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.926
Bind_0102
PFAM: protein of unknown function DUF59; KEGG: hne:HNE_2613 hypothetical protein.
 
   
 0.884
Bind_1575
PFAM: nitrogen-fixing NifU domain protein; KEGG: rpc:RPC_3115 nitrogen-fixing NifU-like.
 
  
 0.827
Bind_1641
PFAM: Fe-S metabolism associated SufE; KEGG: nha:Nham_2625 Fe-S metabolism associated SufE.
 
 
 0.816
Bind_0482
PFAM: NifQ family protein; KEGG: rpd:RPD_1082 NifQ.
  
  
 0.694
Bind_0282
KEGG: rpa:RPA4634 hypothetical protein.
  
 
 0.692
Bind_0103
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: azc:AZC_3609 HesB protein; Belongs to the HesB/IscA family.
  
 
 0.652
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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