Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Bind_0103TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: azc:AZC_3609 HesB protein; Belongs to the HesB/IscA family. (124 aa)    
Predicted Functional Partners:
Bind_1575
PFAM: nitrogen-fixing NifU domain protein; KEGG: rpc:RPC_3115 nitrogen-fixing NifU-like.
  
 
 0.857
Bind_0097
PFAM: aminotransferase class V; KEGG: bja:blr4338 cysteine desulfurase.
 
 
 0.830
Bind_0403
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mca:MCA0212 cysteine desulfurase.
 
 
 0.797
Bind_2346
PFAM: ferredoxin; KEGG: rpa:RPA3956 ferredoxin.
 
 0.739
Bind_0099
KEGG: mex:Mext_3978 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.712
Bind_0100
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: bra:BRADO3543 SufD, needed for FhuF Fe-S center production/stability.
  
 
 0.709
Bind_0098
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: azc:AZC_1044 FeS assembly SufB protein.
  
 
 0.684
Bind_0539
PFAM: ferredoxin; KEGG: mlo:msl0793 ferredoxin.
 
 0.675
Bind_1905
PFAM: ferredoxin; KEGG: pna:Pnap_1587 ferredoxin.
 
 0.666
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.644
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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