Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_0108Porin; PFAM: OmpA domain protein transmembrane region-containing protein; porin; KEGG: azc:AZC_3727 outer membrane protein Omp31 precursor. (244 aa)    
Predicted Functional Partners:
Bind_0513
PFAM: protein of unknown function DUF1150; KEGG: xau:Xaut_2033 protein of unknown function DUF1150.
  
     0.767
Bind_1816
KEGG: mex:Mext_2318 hypothetical protein.
  
     0.759
Bind_0731
PFAM: Invasion associated locus B family protein; KEGG: xau:Xaut_4649 invasion associated locus B family protein.
  
     0.729
Bind_1070
KEGG: rpd:RPD_0792 hypothetical protein.
  
     0.716
Bind_0268
KEGG: nwi:Nwi_0527 hypothetical protein.
  
     0.711
Bind_2171
KEGG: mlo:mll5084 hypothetical protein.
  
     0.706
Bind_3233
PFAM: protein of unknown function DUF1036; KEGG: azc:AZC_0444 hypothetical protein.
  
     0.701
Bind_0924
KEGG: mes:Meso_1118 hypothetical protein.
  
     0.689
Bind_2193
PFAM: Invasion associated locus B family protein; KEGG: mex:Mext_3384 invasion associated locus B family protein.
  
     0.683
Bind_2917
PFAM: protein of unknown function DUF949; KEGG: xau:Xaut_0510 protein of unknown function DUF949.
  
     0.670
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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