STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0116Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: mex:Mext_4469 helix-turn-helix domain protein. (205 aa)    
Predicted Functional Partners:
Bind_3406
KEGG: mex:Mext_2511 hypothetical protein.
  
     0.626
Bind_1633
KEGG: mex:Mext_0926 hypothetical protein.
  
     0.625
Bind_0117
PFAM: aminotransferase class-III; KEGG: swi:Swit_3034 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.610
Bind_0880
KEGG: azc:AZC_2357 hypothetical protein.
  
     0.598
Bind_3675
KEGG: xau:Xaut_4721 hypothetical protein.
  
     0.595
Bind_1107
KEGG: mex:Mext_4294 hypothetical protein.
  
     0.530
Bind_1008
KEGG: mex:Mext_2327 hypothetical protein.
  
     0.527
Bind_3194
KEGG: mex:Mext_2688 putative membrane protein of unknown function.
  
     0.508
Bind_0013
KEGG: mex:Mext_2985 hypothetical protein.
  
     0.506
Bind_0659
KEGG: xau:Xaut_2732 putative exported protein of unknown function.
  
     0.498
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.