Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Bind_0135PFAM: regulatory protein MarR; KEGG: bvi:Bcep1808_5466 transcriptional regulator, MarR family. (157 aa)    
Predicted Functional Partners:
Bind_0134
PFAM: Fusaric acid resistance protein conserved region; KEGG: bra:BRADO4669 putative efflux transporter permease; putative fusaric acid resistance pump.
 
     0.931
Bind_2320
PFAM: Fusaric acid resistance protein conserved region; KEGG: azc:AZC_1076 hypothetical protein.
 
     0.713
Bind_2322
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bov:BOV_A0706 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.660
Bind_1399
PFAM: secretion protein HlyD family protein; KEGG: mex:Mext_4754 secretion protein HlyD family protein.
 
  
 0.567
Bind_1401
KEGG: mex:Mext_4756 fusaric acid resistance protein conserved region.
 
     0.488
Bind_2321
PFAM: protein of unknown function DUF1656; KEGG: rme:Rmet_4792 protein of unknown function DUF1656.
 
     0.475
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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