Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0137PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: rpc:RPC_3182 peptidase C14, caspase catalytic subunit P20. (915 aa)    
Predicted Functional Partners:
Bind_1625
KEGG: bra:BRADO6543 conserved hypothetical protein; putative signal peptide.
  
    0.692
Bind_3253
PFAM: Sel1 domain protein repeat-containing protein; KEGG: rpa:RPA3835 hypothetical protein.
 
     0.567
Bind_3303
KEGG: bja:blr7618 hypothetical protein.
  
     0.557
Bind_2881
KEGG: atc:AGR_C_479 hypothetical protein.
  
     0.505
Bind_0338
KEGG: xau:Xaut_0977 putative transmembrane anti-sigma factor.
  
     0.477
Bind_2315
KEGG: atc:AGR_L_450 hypothetical protein.
  
     0.477
Bind_2816
KEGG: pfl:PFL_4129 hypothetical protein.
  
     0.469
Bind_0039
Hypothetical protein; KEGG: mes:Meso_0915 methyltransferase type 12.
  
     0.465
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.
       0.447
Bind_2187
PFAM: Putative ParB-like nuclease; KEGG: bbt:BBta_3524 hypothetical protein.
  
     0.406
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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