Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Bind_0140PFAM: Ferritin Dps family protein; KEGG: gdi:GDI0826 ferritin-like protein; Belongs to the Dps family. (177 aa)    
Predicted Functional Partners:
clpS
ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
   
 
 0.868
Bind_2679
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: spe:Spro_2413 heavy metal translocating P-type ATPase.
  
  
 0.682
Bind_1221
PFAM: Cold-shock protein DNA-binding; KEGG: noc:Noc_2438 sigma 54 modulation protein/ribosomal protein S30EA.
  
    0.617
Bind_1994
PFAM: OsmC family protein; KEGG: cak:Caul_5086 OsmC family protein.
  
  
 0.604
Bind_1692
PFAM: OsmC family protein; KEGG: acr:Acry_2755 OsmC family protein.
  
  
 0.580
Bind_0768
TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: reu:Reut_C5986 NAD(P)H dehydrogenase (quinone):flavodoxin/nitric oxide synthase; Belongs to the WrbA family.
  
  
 0.565
Bind_1932
TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: gdi:GDI1484 flavoprotein.
  
  
 0.565
Bind_2430
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bcs:BCAN_B0712 thioredoxin peroxidase 2.
  
  
 0.494
Bind_1910
PFAM: Peptidoglycan-binding LysM; KEGG: bbt:BBta_3954 hypothetical protein.
   
  
 0.488
Bind_3237
KEGG: bja:bll1466 hypothetical protein.
  
  
 0.479
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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