STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bind_0197PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: swi:Swit_2867 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B. (265 aa)    
Predicted Functional Partners:
Bind_0198
KEGG: gme:Gmet_2448 hypothetical protein.
       0.727
Bind_1937
PFAM: Pirin domain protein; KEGG: gdi:GDI0848 hypothetical protein; Belongs to the pirin family.
 
  
 0.535
Bind_2116
PFAM: Pirin domain protein; KEGG: cak:Caul_0818 pirin domain protein; Belongs to the pirin family.
 
  
 0.533
ribB
Transcriptional regulator, XRE family; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.524
Bind_0195
PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_B2119 predicted membrane fusion protein of efflux pump.
       0.520
Bind_0196
KEGG: bxe:Bxe_B2118 hypothetical protein.
       0.520
Bind_0193
Outer membrane efflux protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
       0.498
Bind_0194
PFAM: Fusaric acid resistance protein conserved region; KEGG: bxe:Bxe_B2120 conserved hypothetical membrane protein, putative efflux pump.
       0.498
Bind_1219
PFAM: Rhodanese domain protein; KEGG: xau:Xaut_4678 rhodanese domain protein.
 
      0.486
Bind_0623
KEGG: gdi:GDI1198 putative 2-keto-4-pentenoate hydratase-like.
  
  
 0.425
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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