Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0237PFAM: PepSY-associated TM helix domain protein; KEGG: nha:Nham_0971 hypothetical protein. (435 aa)    
Predicted Functional Partners:
Bind_0238
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpe:RPE_4578 TonB-dependent siderophore receptor.
 
  
 0.767
Bind_0236
PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: azc:AZC_3753 2OG-Fe(II) oxygenase superfamily.
 
     0.751
Bind_3473
PFAM: copper resistance protein CopC; KEGG: bbt:BBta_p0115 copper resistance protein C.
  
    0.697
Bind_2327
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gvi:glr0349 ferrichrome-iron receptor.
 
  
 0.564
Bind_1846
PFAM: TonB-dependent receptor; KEGG: pfl:PFL_0213 TonB dependent receptor, putative.
 
   
 0.514
Bind_3088
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_0213 TonB dependent receptor, putative.
 
   
 0.508
Bind_2555
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pae:PA2335 probable TonB-dependent receptor.
 
   
 0.478
Bind_0549
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nar:Saro_1708 TonB-dependent receptor.
 
   
 0.469
Bind_2554
PFAM: TonB-dependent receptor; KEGG: pfl:PFL_0213 TonB dependent receptor, putative.
 
   
 0.458
Bind_1335
PFAM: protein of unknown function DUF461; KEGG: xau:Xaut_0418 protein of unknown function DUF461.
  
    0.442
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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