Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0271TolA protein; KEGG: bcs:BCAN_A1737 TolA protein. (436 aa)    
Predicted Functional Partners:
Bind_0272
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mex:Mext_4762 biopolymer transport protein ExbD/TolR.
       0.828
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.827
Bind_2709
PFAM: Sporulation domain protein; KEGG: mex:Mext_3397 sporulation domain protein.
  
     0.748
Bind_2348
KEGG: rpa:RPA3958 hypothetical protein.
  
   
 0.731
Bind_1205
PFAM: RDD domain containing protein; KEGG: sme:SMc01765 hypothetical protein.
  
     0.730
Bind_0464
PFAM: cell divisionFtsK/SpoIIIE; KEGG: mex:Mext_2101 cell divisionFtsK/SpoIIIE.
    
 
 0.715
Bind_2073
PFAM: TonB-dependent receptor plug; KEGG: sat:SYN_01058 TonB dependent receptor family.
  
 
   0.714
Bind_0013
KEGG: mex:Mext_2985 hypothetical protein.
 
     0.692
Bind_0927
KEGG: rpc:RPC_3143 hypothetical protein.
  
     0.667
Bind_2854
TIGRFAM: TonB family protein; KEGG: rru:Rru_A2153 TonB-like.
 
   
 0.666
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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