Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Bind_0288PFAM: manganese containing catalase; KEGG: ava:Ava_3821 manganese containing catalase. (245 aa)    
Predicted Functional Partners:
Bind_2984
PFAM: protein of unknown function DUF892; KEGG: azc:AZC_2285 hypothetical protein.
    0.808
Bind_2287
PFAM: protein of unknown function DUF892; KEGG: xau:Xaut_3218 protein of unknown function DUF892.
    0.796
Bind_0502
KEGG: rca:Rcas_3511 hypothetical protein.
  
     0.560
Bind_0838
PFAM: glycosyl transferase family 2; KEGG: bpd:BURPS668_A2618 glycosyl transferase, group 2 family protein.
  
    0.528
Bind_0841
PFAM: glycosyl transferase group 1; KEGG: amr:AM1_1894 glycosyl transferase, group 1 family protein.
  
     0.517
Bind_0842
KEGG: ava:Ava_1124 hypothetical protein.
  
     0.502
Bind_3445
KEGG: swi:Swit_3661 hypothetical protein.
  
     0.482
Bind_0592
KEGG: ana:alr0587 unknown protein.
  
    0.452
Bind_0286
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bte:BTH_I1339 oxidoreductase, short-chain dehydrogenase/reductase family.
  
    0.433
Bind_0287
PFAM: MaoC domain protein dehydratase; KEGG: bxe:Bxe_B2727 putative MaoC-like dehydratase.
       0.424
Your Current Organism:
Beijerinckia indica
NCBI taxonomy Id: 395963
Other names: B. indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica ATCC 9039, Beijerinckia indica subsp. indica str. ATCC 9039, Beijerinckia indica subsp. indica strain ATCC 9039
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